Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2479745 chr13:114164526 A/G 3.99E-12 178 24.23 30.33 3.32 KM Plot
PCPG rs2479746 chr13:114164431 C/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2479747 chr13:114164080 G/A 4.52E-12 177 24.1 29.95 3.32 KM Plot
PCPG rs2479748 chr13:114158727 C/T 0.000387 178 24.17 29.43 3.7 KM Plot
PCPG rs2479749 chr13:114158706 C/A 0.000397 177 24.23 29.43 3.7 KM Plot
PCPG rs2479750 chr13:114152440 C/T 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs248470 chr5:141188537 G/C 1.11E-16 173 15.08 29.57 24.77 KM Plot
PCPG rs2490954 chr13:114155230 C/G 3.81E-12 178 24.38 29.5 3.32 KM Plot
PCPG rs2490955 chr13:114155653 T/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2490957 chr13:114155774 T/C 3.98E-12 178 24.38 29.5 3.32 KM Plot
PCPG rs2490959 chr13:114158828 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2490960 chr13:114159764 C/T 3.83E-12 178 3.32 29.5 24.38 KM Plot
PCPG rs2490961 chr13:114159789 G/A 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2490962 chr13:114159797 C/G 0.000387 178 24.17 29.43 3.7 KM Plot
PCPG rs2490963 chr13:114159872 T/C 3.85E-12 178 24.23 29.57 3.32 KM Plot